FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930061

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930061
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477049
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43790.9179350548895397No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29590.6202717121302005No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21770.4563472515401981No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17810.37333691088336834No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16040.3362338040746338No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14140.2964056103251448No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12040.2523849751283411No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12010.2517561089112439No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11580.24274235979951744No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9820.20584887506314864No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9020.1890791092738901No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8660.18153271466872375No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8250.17293820970172874No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7380.15470108940591007No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7340.15386260111644717No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7130.14946053759676678No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC7100.1488316713796696No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6980.14631620651128083No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6850.1435911195705263No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6130.12849833036019362No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6100.1278694641430964No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5910.12388664476814751No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5750.12053269161029578No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5060.1060687686170603No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4880.10229557131447711No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)