FastQCFastQC Report
Wed 31 May 2023
EGAF00007930065

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930065
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435415
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12230.2808814579194561No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9150.21014434505012458No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8050.18488109045393475No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7860.18051743738732015No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT7730.17753178002595224No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6520.14974219997014343No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5330.12241195181608351No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4380.10059368648301047No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)