FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930066

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930066
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421953
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8930.21163494512422No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7940.18817261638144533No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7630.18082582657310173No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT7210.17087211134889432No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5490.13010927757356863No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4460.105698975952298No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)