FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007930067

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930067
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421953
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39860.9446549734212104No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11540.27349017544608045No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7920.18769862994219735No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7570.17940386725535784No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT7440.176322955400246No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5870.1391150199192801No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4960.11754863693349733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)