FastQCFastQC Report
Sun 21 May 2023
EGAF00007930068

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930068
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509183
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC32130.6310108546436153No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT31820.6249226702384014No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC24460.48037738887590514No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG23050.4526859694844486No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22010.43226109277018276No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG20600.40456967337872635No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG20150.3957319863388997No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT19290.37884218444056456No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG17530.34427700846257636No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT16100.3161928029804609No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16030.3148180516631545No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT15560.305587578532669No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT15170.29792824976481935No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC15000.2945895679942182No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14550.28575188095439163No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG13080.25688210329095823No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG13070.2566857102456288No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13000.25531095892832245No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT11970.2350824752593861No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA11350.22290610644895842No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11300.22192414122231105No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG10590.20798023500391805No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT10560.2073910558679296No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9410.18480585565503954No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG9110.1789140642951552No Hit
GTAAGCCAGTACCGCGCGACGGTTTTTGGAGTATGCCGCTTCGT9040.1775393129778488No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT8890.17459341729790664No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8850.17380784511658873No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8800.17282587988994133No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG8600.16889801898335177No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG8540.1677196607113749No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG8470.16634490939406854No Hit
ACGCTGCAGACCGCTGCGACGGTGAATGGCACGGCGCGGTGCTG8150.16006033194352523No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG7330.14395610222650795No Hit
GTATGCCAGTACCGCACGACGGTTTTTGGAGTAGGCAGCTTCAT7230.14199217177321316No Hit
ACCGTGGTCGCCGTTGTCGCCATCGTCACCATCGTCGCCGTCAT7200.14140299263722475No Hit
TACCGGGTGACCAGCCGGGATGACCACAACGTCACCCGGGGACA7190.14120659959189524No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6770.13295809168805714No Hit
AACACCGTTGGTGGTACCAACACCTTTGTCCGGAGATTTGGATG6630.13020858905344446No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6310.12392401160290112No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT6240.12254926028559476No Hit
GCCCTCAACATCCAGCATTTCCATGTCGCCCAGGGTAAACTTAG6210.12196008114960633No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6210.12196008114960633No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6200.12176368810427685No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA6170.12117450896828841No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5960.11705025501636936No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC5920.11626468283505145No Hit
CGGTTTATCTTTCTCGACGTCTTCCGCCAGCGGGAATGCCGGGC5820.11430075238175665No Hit
GGTCGCACCAGCTTCCAGTTCCAGGGTAATGTTGGATTTCAGGT5750.1129260010644503No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5750.1129260010644503No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5750.1129260010644503No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT5590.10978371233917865No Hit
GGTTTCTGCAGCCGCGTTGTAGGTCAGAGAGGCGGACAGCTGGT5310.10428470706995323No Hit
CAGGTTGCCGTTTACGTAGTGATACAGAGCCACACCTTTTTTCG5260.10330274184330586No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC5140.10094602529935211No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)