FastQCFastQC Report
Sun 21 May 2023
EGAF00007930072

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930072
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523796
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA25400.4849216107034036No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22490.4293656308944704No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18630.35567281918914995No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16390.3129080787176687No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16050.3064170020389617No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG13320.25429747458934393No Hit
GTAAGCCAGTACCGCGCGACGGTTTTTGGAGTATGCCGCTTCGT13230.2525792484096862No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12330.23539698661310893No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11030.21057816401805282No Hit
GTATGCCAGTACCGCACGACGGTTTTTGGAGTAGGCAGCTTCAT11010.2101963359781289No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10940.2088599378383951No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC10690.20408708733934583No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9570.18270471710360522No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8550.1632314870674843No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8350.15941320666824488No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8340.15922229264828291No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG8340.15922229264828291No Hit
CGGGCTCGGTGGGTGACGATGGTGGGTGGAAACGCCACGACGAC8280.1580768085285111No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8030.15330395802946184No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7780.1485311075304126No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7620.14547648321102108No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7570.14452191311121124No Hit
GGTGGTACGGGTGGAAGAGGAGCGCGCGCTCGGCAGGCTGACGG7220.13783992241254228No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG6920.1321125018136832No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6320.120657660615965No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6150.1174121222766115No Hit
GTTACGTTCGAAACGAATCAGATCGGTACCCTGCGCCATAGAGC5710.10901190539828481No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5690.1086300773583609No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5410.10328448479942573No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5240.10003894646007225No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)