FastQCFastQC Report
Sun 21 May 2023
EGAF00007930073

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930073
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523796
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT54931.0486907116511008No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA38630.7375008591130898No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17970.34307249387165994No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17180.3279902862946643No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG17050.32550840403515874No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16500.3150081329372504No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15320.2924802785817379No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15130.2888529122024605No Hit
GCACTGGGCCAGCGTCGTGCCGATGCAGTTA13380.25544295870911576No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG12780.24398811751139754No Hit
GCGCTGGGCCAGCGTCGCGCTGACGCAGTTA10970.20943267989828102No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC10620.20275068919961206No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10140.1935868162414375No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9520.18175014700379535No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8680.1657133693269899No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8540.1630405730475223No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA8510.1624678309876364No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8340.15922229264828291No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8230.15712223842870127No Hit
GCGGACGAAGAGGAAGAGGAACTGCTGGCGC8140.15540401224904352No Hit
TCCGAACCAGAAATCACTGAACACCGTGACC7860.15005841969010836No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT7150.13650352427280849No Hit
GCAGCTCACTCCCGTTCCGGCTCCGTGAGCC6340.12103948865588893No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6130.11703029423668758No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6120.1168393802167256No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)