FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930074

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930074
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510624
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA25030.49018455850097137No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22920.4488625681519083No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18470.36171429466691735No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16290.31902143260011284No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16230.3178463996991916No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG13260.2596822711035909No Hit
GTAAGCCAGTACCGCGCGACGGTTTTTGGAGTATGCCGCTTCGT12500.24479852102525537No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11800.23108980384784106No Hit
GTATGCCAGTACCGCACGACGGTTTTTGGAGTAGGCAGCTTCAT10880.2130726327003823No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10750.21052672808171963No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10480.2052390800275741No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC10050.1968180109043053No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9240.18095506674186876No Hit
CGGGCTCGGTGGGTGACGATGGTGGGTGGAAACGCCACGACGAC8690.17018393181675753No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8360.16372125086169081No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8250.16156702387666855No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8010.15686689227298364No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7630.14942501723381588No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG7390.14472488563013097No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7220.1413956257441875No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7170.14041643166008647No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG7070.13845804349188445No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7020.13747884940778343No Hit
GGTGGTACGGGTGGAAGAGGAGCGCGCGCTCGGCAGGCTGACGG6990.1368913329573228No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6380.12494516513129035No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6040.11828664535940339No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5700.11162812558751646No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5360.1049696058156295No Hit
GTTACGTTCGAAACGAATCAGATCGGTACCCTGCGCCATAGAGC5280.10340289528106786No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)