FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930076

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930076
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494890
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8080.16326860514457758No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7460.15074056861120652No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6690.1351815554971812No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6500.1313423184950191No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6470.13073612317888822No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6150.12427003980682576No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6140.1240679747014488No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6090.12305764917456405No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5550.11214613348420861No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5180.10466972458526137No Hit
CTGGCAGCCGTAGAAGACACCGTTTTCGGTCTGGCCGTTAATCT5160.10426559437450747No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5120.10345733395299966No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)