FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930077

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930077
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494890
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15260.30835135080522946No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10500.21216836064580005No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8610.17397805572955607No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8260.16690577704136272No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8060.16286447493382367No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7020.14184970397462063No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6880.1390207924993433No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6630.13396916486491947No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6600.13336296954878862No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6230.12588656064984138No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6200.1252803653337105No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6180.1248762351229566No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5990.12103699812079452No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5530.11174200327345471No Hit
GGTTATATCCGTCAGGCCACCGGTTACACTC5350.10810483137666956No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)