FastQCFastQC Report
Sun 21 May 2023
EGAF00007930079

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930079
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474041
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA36160.7628032174432169No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25230.532232444029103No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23400.4936281882790729No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15900.33541402536911363No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13620.28731691984448604No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10470.22086697142230313No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8970.18922413884031128No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8600.18141890680341996No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6650.14028322444683056No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6450.136064180102565No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6310.13311084906157905No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6140.1295246613689533No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5900.12446180815583463No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5610.11834419385664953No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5050.1065308696927059No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC4910.10357753865172001No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)