FastQCFastQC Report
Wed 31 May 2023
EGAF00007930081

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930081
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458652
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43300.9440708859876334No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA34020.7417388346720389No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24570.5357002694853614No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22630.4934024053094721No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14360.31309140699266547No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13140.28649171921195155No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9820.21410568361197596No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8450.1842355424156005No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6720.14651631302163734No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6340.13823116436862806No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6260.13648692254694192No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5710.12449526002284957No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5470.1192625345577911No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5010.10923314408309567No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4920.10727087203369874No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)