FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007930087

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930087
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448918
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43200.9623138301426988No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28430.6333005136795584No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23850.5312774270579482No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14610.3254491911663155No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13810.3076285646821914No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC13650.3040644393853666No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11930.2657500924444999No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11570.25773081052664404No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11190.24926601294668516No Hit
GCTGCTTCTAGCGATGCACTGGAAGCCCTGG8140.18132487447596218No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7920.1764242021928281No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7660.17063249858548776No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7580.16885043593707535No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT7240.16127666968132265No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6810.15169808294610598No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6700.14924774680453892No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6400.1425650118729924No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6190.13788709742090982No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5990.13343194079987883No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5860.13053608899620867No Hit
ACTACCGACCCGGATGCAGCGGCTTCCGCGA5860.13053608899620867No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5760.12830851068569316No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5750.1280857528546416No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5530.1231850805715075No Hit
TCTGTCGATGCAGCTAATGTGTCCATTGATG5310.11828440828837337No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5160.11494304082260012No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5050.11249270468103305No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4810.10714651673579584No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4550.10135481312845553No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)