FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930094

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930094
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426400
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14550.34122889305816134No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12450.2919793621013133No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10180.23874296435272047No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10040.23545966228893056No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9620.22560975609756095No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8840.20731707317073172No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8640.2026266416510319No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7970.18691369606003752No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7550.17706378986866791No Hit
GTGACGACGGCGGCGTTCACCGCCGTCCGGACCTTCGCCTTCAC6590.15454971857410882No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5960.1397748592870544No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5320.12476547842401502No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5160.12101313320825517No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4980.11679174484052533No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGACGGC4860.11397748592870544No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4850.11374296435272045No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4820.11303939962476549No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT4410.10342401500938085No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)