FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007930095

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930095
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426400
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38260.897279549718574No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25520.5984990619136961No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19010.44582551594746717No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18730.4392589118198874No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10120.2373358348968105No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9520.2232645403377111No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9390.2202157598499062No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8270.19394934333958724No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7950.18644465290806753No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC7680.1801125703564728No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6730.15783302063789867No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5910.13860225140712945No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5700.13367729831144465No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5470.12828330206378988No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5090.11937148217636023No Hit
CGTCACGCACATCGCCAGGGTGTAGGCGGCA4900.11491557223264541No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4860.11397748592870544No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4590.10764540337711069No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4270.10014071294559099No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)