FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930099

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930099
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460302
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37580.8164205239169067No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA29330.6371903663247173No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21210.46078444151882897No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG20820.45231174315992545No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG17770.3860508970197826No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17090.37127798706066883No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG15450.3356492042181003No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA15220.33065248467310593No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG13960.30327915151357154No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC13440.29198222036836685No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC9570.2079069828069398No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG9310.20225851723433746No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG8500.1846613744889225No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8390.18227163905435997No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8280.17988190361979745No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6860.1490325916463539No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC6580.14294962872201294No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6360.1381701578528879No Hit
GTTGTTCCGCCGGGTGCCCCGGCAACTTGCG6350.13795290917701855No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5970.1296974594939844No Hit
ACCCAGGTTTACCAGGACCCAGCAATCGTAC5020.10905883528639893No Hit
TGCGAATGGGAACAAACCGAAGATAGCGGTC4760.10341036971379661No Hit

[OK]Adapter Content

Adapter graph