FastQCFastQC Report
Wed 31 May 2023
EGAF00007930100

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930100
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471446
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7270.15420642024749387No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6430.1363888971377422No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6420.136176783767388No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6300.13363142332313774No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5850.12408632165719935No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5550.11772292054657374No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5450.11560178684303186No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5370.11390487988019837No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5080.10775359213992695No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4820.10223864451071808No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4770.10117807765894714No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)