FastQCFastQC Report
Wed 31 May 2023
EGAF00007930101

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930101
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471446
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13600.2884741836816942No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7780.1650242021355574No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7730.16396363528378646No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6530.13851003084128405No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6400.13575255702667963No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6270.1329950832120752No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6190.1312981762492417No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5750.12196518795365746No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5640.11963194087976142No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5610.11899560076869885No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5590.11857137402799048No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5400.11454121999126092No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5220.11072317932488557No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)