FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930103

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930103
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440049
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39110.888764660299194No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA37080.8426334340039405No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16150.3670045835804649No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15570.35382423321039247No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15320.3481430477060509No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14580.3313267386131999No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11880.269969935166311No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11790.2679247083847481No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8590.19520553392917608No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8280.18816086390379252No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8130.1847521526011876No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7820.17770748257580404No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6710.15248301893652752No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5920.1345304727428082No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5330.1211228749525621No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5240.11907764817099913No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4980.1131692152464839No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4900.11135123588509463No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4740.10771527716231602No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC4580.10407931843953741No Hit

[OK]Adapter Content

Adapter graph