FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930109

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930109
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496289
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40050.806989475890056No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC35990.7251823030532613No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG30250.6095238862839999No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT22890.4612231985798597No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17930.3612814307792435No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG17340.34939319630296056No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16150.3254152318507966No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15960.3215868173584343No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12540.25267535649591266No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12210.24602600500917812No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11750.23675721202766936No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11500.23171982453771894No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10980.2212420585586221No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10810.2178166350654558No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10800.2176151395658578No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10710.21580168006947567No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG10100.20351045459399664No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9520.19182371561731168No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8900.17933099464223468No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8510.17147267015791204No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8230.16583079616916757No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8110.16341285017399135No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7760.15636050768806078No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7340.1478976967049441No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7170.1444722732117778No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7160.1442707777121798No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6900.13903189472263136No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6180.12452421875157418No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6010.1210987952584079No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5940.11968832676122179No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5910.11908384026242773No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5780.11646439876765353No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5590.11263598427529121No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5540.11162850677730113No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5360.10800158778453683No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5310.10699411028654675No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)