FastQCFastQC Report
Wed 31 May 2023
EGAF00007930111

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930111
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474267
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39170.825906082438795No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38650.8149417943900799No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC34580.7291251552395591No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG27880.5878545207657291No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT20500.43224597115127134No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17240.36350831915355697No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG16870.3557068065035096No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15730.33166971347363405No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15590.32871778976821076No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11480.24205774384471196No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10710.22582216346488368No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10690.22540046007839465No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10520.22181598129323776No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10430.21991831605403708No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9690.20431529075394242No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9440.19904399842282933No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG9300.19609207471740603No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9120.1922967442390046No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8190.172687536767264No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8050.16973561306184068No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7930.16720539274290644No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7780.16404261734423858No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7550.15919302839961458No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6990.1473853335779213No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6650.14021637600760753No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6520.13747530399542873No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6330.13346912182378282No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6100.12861953287915878No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5800.1222939820818231No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5740.12102887192235598No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5520.11639013467097648No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5520.11639013467097648No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5210.10985373218039628No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5170.10901032540741819No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5130.1081669186344401No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4880.10289562630332702No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4830.10184136783710442No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4820.1016305161438599No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)