FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930113

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930113
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462503
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13650.295133220757487No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13090.28302519118794905No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11690.2527551172641042No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10570.22853905812502837No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10080.2179445322516827No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8050.1740529250621077No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7980.17253942136591546No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7570.16367461400250377No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7070.15286387331541634No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6930.14983686592303186No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6500.14053962893213665No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6020.1301613178725327No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5690.12302622901905502No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5560.12021543644041227No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5460.1180532883029948No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4940.10681011798842385No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)