FastQCFastQC Report
Wed 31 May 2023
EGAF00007930115

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930115
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489042
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21150.43247819205712396No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13620.2785036867999067No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13110.26807513465101157No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12920.2641899877720114No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9530.19487078819406103No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9470.19364389970595572No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9010.18423775463048164No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7750.15847309638027No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA7350.15029383979290123No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5460.11164685241758378No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG4950.10121830026868857No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)