FastQCFastQC Report
Wed 31 May 2023
EGAF00007930116

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930116
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473583
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22970.485025856080138No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18350.38747167867089827No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18040.3809258355979839No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17700.3737465238405939No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16390.3460850579518268No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13510.2852720642421709No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12300.25972216063498904No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA12080.25507672361550143No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11510.2430408186104653No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT10910.23037144492095368No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9890.20883350964878383No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7470.15773370243442017No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7000.14780935971096934No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6430.13577345470593327No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6350.13408420488066505No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5810.12268176856010456No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5770.12183714364747045No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5740.12120367496299488No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5500.1161359254871902No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC5270.11127933223954407No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5160.10895661372980027No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5150.10874545750164173No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5140.10853430127348322No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5020.10600042653558088No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)