FastQCFastQC Report
Wed 31 May 2023
EGAF00007930117

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930117
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473583
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30110.6357914029853268No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19540.41259926982176304No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18460.38979439718064207No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18100.38219277296693505No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18020.38050352314166686No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC14880.3142004674998891No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13370.28231587704795147No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG13160.2778815962566224No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12510.2641564414263181No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12440.2626783478292084No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12140.25634366098445255No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA10880.22973797623647807No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC10200.2153793527216982No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8640.1824389811289679No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7490.15815601489073722No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7080.1494986095362376No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6950.1467535785701767No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6770.14295276646332322No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6580.1389407981283112No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6060.12796067426406776No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5790.12225945610378751No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5650.11930326890956812No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5260.11106817601138554No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC5220.11022355109875143No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5110.10790083258900762No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4980.10515580162294676No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4920.10388886425399561No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4810.10156614574425181No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)