FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930123

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930123
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459869
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39250.853503932641687No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19780.43012249140516107No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13740.29878073973240205No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9400.20440603737151233No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8650.1880970450280406No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6310.1372129889164088No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6180.13438609691020703No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5820.12655778058534062No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4870.1058997236169431No Hit
GAAGCAATGGCTGAAGGTCGTGGTAAAGCGC4600.10002848637329326No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)