FastQCFastQC Report
Wed 31 May 2023
EGAF00007930127

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930127
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416428
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35190.8450440412268146No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16320.3919044828877981No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14280.34291642252682336No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12940.31073799072108504No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9790.23509466222252107No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9500.22813067324963737No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9040.21708434591333914No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8130.19523182879153178No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8120.1949916912407427No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6940.16665546024762984No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6840.16425408473973893No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6240.1498458316923934No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6160.14792473128608066No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5900.1416811549655643No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5580.13399675334031333No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4710.11310478642166233No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)