FastQCFastQC Report
Wed 31 May 2023
EGAF00007930128

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930128
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475141
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11260.23698228525848114No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8900.1873128187211796No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7750.16310947697630807No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7500.15784788094481428No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6580.13848520754891708No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6260.13175036462860498No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6260.13175036462860498No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6080.12796201548592945No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5460.1149132573278248No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5320.11196676355018827No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5110.10754702288373345No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4890.10291681837601892No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)