FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930129

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930129
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475141
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38230.8046032651360333No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10640.22393352710037653No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9660.20330807065692078No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9090.19131163170511492No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7380.15532231484969725No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7040.14816654424686565No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6770.14248402053285236No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6720.14143170132655358No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6090.1281724793271892No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5840.12291088329569538No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5740.12080624488309787No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5600.11785975110546133No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5160.10859934209003222No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5070.10670516751869444No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)