FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930130

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930130
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510419
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12100.23706014078629517No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9340.18298691859041297No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8430.16515842866350977No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7970.15614622496419608No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7670.15026870081246974No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7270.14243200194350134No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6900.13518305548970552No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6290.12323208971452865No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6260.122644337299356No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6180.12107699752556232No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5410.1059913522027981No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)