FastQCFastQC Report
Sun 21 May 2023
EGAF00007930131

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930131
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510419
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14270.27957423215044896No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12140.23784381067319202No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10400.20375417059317935No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9410.18435834089248246No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8690.17025228292833927No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7720.15124828817109082No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7540.147721773680055No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7320.14341158930212236No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7010.13733814767867183No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6560.12852186145108233No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6510.1275422740924613No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5670.11108520646762757No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5590.10951786669383388No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5490.10755869197659179No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)