FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930136

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930136
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499934
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11000.22002904383378605No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7850.15702072673592915No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGG7850.15702072673592915No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG7670.15342025147319446No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGA7220.14441906331635776No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC7130.1426188256849904No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6170.12341629095040546No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA5160.1032136241983942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)