FastQCFastQC Report
Wed 31 May 2023
EGAF00007930137

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930137
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499934
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT16310.32624306408445913No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11190.22382954550000603No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAAAC8020.16042117559517857No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACCAC7770.15542051550804709No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC7760.15522048910456182No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC7010.1402185088431673No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6760.1352178487560358No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5860.11721547244236238No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5640.11281489156568668No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5470.10941444270643726No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC5160.1032136241983942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)