FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930139

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930139
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486825
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22250.4570430852975915No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT15580.3200328660196169No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10610.21794279258460433No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAAAC7440.15282699121861038No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACCAC7230.14851332614389154No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6700.1376264571457916No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6530.1341344425614954No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6220.12776665126071998No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5560.11420941816874647No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5360.1101011657166333No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5290.10866327735839366No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)