FastQCFastQC Report
Sun 21 May 2023
EGAF00007930140

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930140
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484452
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA14020.2893991561599498No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG12690.26194545589655943No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10640.2196296021071231No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5780.11931006580631312No Hit
AGCCGGGGACGGGTAAGAGGTGGTAACCGGGGACGGATAGC5530.11414959583199161No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5450.11249824544020873No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCT4890.10093879269772858No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)