FastQCFastQC Report
Wed 31 May 2023
EGAF00007930143

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930143
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485463
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT29810.6140529762309382No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC15460.3184588732817949No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG13900.2863246014629333No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC12130.24986456228384035No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT10530.2169063347773157No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7700.15861146987515012No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6050.12462329775904653No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5850.12050351932073092No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5520.11370588489751021No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)