FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930144

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930144
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486513
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT15280.3140717719773161No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC14810.3044111873680662No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC12500.2569304417353699No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT8300.1706018133122856No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7210.14819747879296133No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5970.12270997897281266No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5850.12024344673215309No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5530.11366602742372764No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5410.11119949518306807No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5380.11058286212290319No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5150.10585534199497239No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)