FastQCFastQC Report
Wed 31 May 2023
EGAF00007930145

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930145
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486513
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT29500.6063558424954729No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC15270.31386622762392785No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14620.3005058446536886No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC11860.24377560311851892No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT11010.2263043330805138No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7430.15271945456750385No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6220.12784858780752004No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5570.11448820483728082No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5250.10791078552885534No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)