FastQCFastQC Report
Wed 31 May 2023
EGAF00007930146

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930146
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487938
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC22080.4525165082448999No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC18570.3805811394070558No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG18050.3699240477273752No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG17950.3678746070197443No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC16000.327910513220942No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA15960.32709073693788965No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT15180.3111050994183687No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCT14580.2988084551725834No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG13360.2738052785394866No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT11860.2430636679250233No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGT11720.24019445093434005No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT11420.23404612881144735No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10530.21580610651353244No Hit
CGGTTTGCCCCAACCGGTGCACTGCAGAACACCACCGCAAT9960.20412429448003638No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT9390.19244248244654033No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT9210.18875348917280474No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG8660.17748156528083486No Hit
GCCGCAGTCACCGGTCTGGCAAGAACCACGGCCGGCGCCGT8270.1694887465210744No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCT7860.16108603961978776No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7440.15247838864773802No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA7390.1514536682939226No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGC7260.14878939537400243No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6890.14120646475576815No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC6640.13608286298669095No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT6370.13054937307608755No Hit
CCAACCGGTGCACTGCAGAACACCACCGCAGTCGCCGGTCT5150.1055461964429907No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGG5150.1055461964429907No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5080.10411158794764908No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG4920.10083248281543968No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)