FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487938
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT36480.7476359701437477No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG34250.701933442363579No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT23660.484897671425468No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC22010.4510818997495583No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC18680.3828355241854498No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC17290.3543482983493804No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC15800.32381163180568023No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT15740.3225819673811017No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACGTC15410.3158188130459198No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC12910.2645827953551476No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCGGC11970.24531805270341725No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10790.22113465235337276No Hit
CGTCTGGACCGCGGTCAGACTTGGGTGATCAAC10450.21416655394742773No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC9710.19900069271095916No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT9690.198590804569433No Hit
TGGGCTGCGTCCACCCCGATCGGTGGCGGTCGT8710.17850628563465032No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCGCG8060.16518492103504953No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7900.16190581590284012No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCGAA7590.15555254970918436No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA7140.14633006652484537No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6930.1420262410388205No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC6390.1309592612176137No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5480.11230935077817263No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5450.11169451856588336No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5350.10964507785825248No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC5300.10862035750443703No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCAGC5290.10841541343367396No Hit
GGTGGTCGCCGTCTGGATCGTGGTCAGACCTGG5290.10841541343367396No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGGCT4980.10206214724001819No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT4910.10062753874467657No Hit
ATGGAATCTTTCGAAGGCCAGGGCGACTCCCGT4880.10001270653238731No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)