FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930148

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930148
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445039
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA13960.31368037407957505No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13210.2968279184520907No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG12990.2918845314680286No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG12920.29031163560946344No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC10800.24267536103577436No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC10020.2251488071831907No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT8890.19975777403778097No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGAC8670.1948143870537189No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG8440.18964630066129035No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA7950.17863602965133393No Hit
ACCAATGATGGTCGGCGGGGTTTTCGGACGAGAGGTTTCCG7250.1629070710656819No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6730.15122270183062608No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA6290.14133592786250193No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCC5720.12852806158561383No Hit
CGGTTTATCTTTCTCGACGTCTTCCGCCAGCGGGAATGCCG5350.12021418347605489No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5010.11257440359159535No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC4720.10605812074896807No Hit
CTCTGCTTCGCGGTGAATCCAGTTACGGGCTTCAACGCCTT4710.10583342134060161No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)