FastQCFastQC Report
Wed 31 May 2023
EGAF00007930149

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930149
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445039
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG31540.7087019339878078No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT21720.48804711497194625No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20660.46422897768510174No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC13420.3015466060277863No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12920.29031163560946344No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC9840.22110421783259446No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT9210.2069481551055076No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGCTG9030.20290356575491134No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC8930.20065657167124681No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCACC8550.1921179941533214No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT8520.191443895928222No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC7850.17638903556766936No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC6520.14650401425493048No Hit
CACACCCCTCCGATGCCGTCTATCGGTCTGGAA5820.1307750556692784No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACCTG5500.12358467460155177No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA5230.11751779057565742No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT4890.10987801069119786No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGAAA4770.10718161779080036No Hit
ATCATCGAAATTCAGGACTACCCGTTCCCGACC4650.10448522489040286No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT4520.10156413258163892No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)