FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930150

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930150
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447521
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA14270.3188677179394933No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13400.29942728944563496No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG12800.286020097380905No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG11950.2670265752892043No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC10910.24378744237700578No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC9970.22278284147559554No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT9040.2020016937752642No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGAC8730.19507464454182039No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG8620.19261665932995323No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA8290.18524270369435178No Hit
ACCAATGATGGTCGGCGGGGTTTTCGGACGAGAGGTTTCCG7260.16222702398323208No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6770.1512778171303693No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA6500.14524458070124086No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCC5380.12021782218041165No Hit
CGGTTTATCTTTCTCGACGTCTTCCGCCAGCGGGAATGCCG5290.11820674337070217No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5080.11351422614804668No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC5040.11262041334373135No Hit
CTCTGCTTCGCGGTGAATCCAGTTACGGGCTTCAACGCCTT4750.10614027051244522No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)