FastQCFastQC Report
Sun 21 May 2023
EGAF00007930151

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930151
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447521
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG32290.7215303862835487No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT21780.48668107194969623No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21000.46925172226554734No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13260.2962989446305313No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC12370.27641160973451523No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC9940.22211248187235907No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC9180.20513003859036782No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT9120.20378931938389483No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT9060.20244860017742186No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGCTG9030.20177824057418534No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCACC8360.1868068761019036No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC8010.17898601406414447No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC6730.15038400432605398No Hit
CACACCCCTCCGATGCCGTCTATCGGTCTGGAA5720.12781523101709194No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA5480.12245235419119996No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACCTG5310.1186536497728598No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGAAA4720.10546991090920872No Hit
ATCATCGAAATTCAGGACTACCCGTTCCCGACC4710.10524645770812989No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT4480.10010703408331677No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)