FastQCFastQC Report
Wed 31 May 2023
EGAF00007930152

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930152
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437867
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG13070.29849246460683265No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11660.26629090568597313No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT7880.17996332219600927No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7570.17288354683043025No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT7400.1690010893718869No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6870.15689695729525177No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6090.13908332895605288No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA5480.1251521580753973No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5140.11738724315831063No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT5100.11647372375630043No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG4890.11167774689574687No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGA4600.10505473123117294No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGG4410.10071551407162449No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)