FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930154

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930154
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441241
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG13340.30232911266178797No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11200.25382953986596896No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT7860.17813394494165322No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT7750.17564097624654101No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7070.1602298970403929No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7010.15887009593396806No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6040.13688664471343323No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA5730.12986100566357162No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5130.11626299459932327No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT4880.11059715665588646No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGG4650.10538458574792461No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG4470.10130518242865011No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)