FastQCFastQC Report
Sun 21 May 2023
EGAF00007930155

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930155
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441241
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21140.47910325649701635No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15330.347429182691545No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC13330.30210247914405053No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11190.25360290634823146No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC7780.17632087679975345No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7370.16702890257251707No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT7130.16158969814681773No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5980.1355268436070084No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC5690.12895447159262172No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5200.11784942922348558No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC4850.10991725610267405No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGATC4830.10946398906719912No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAAAC4810.10901072203172416No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG4730.10719765388982438No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGGTG4480.10153181594638758No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)