FastQCFastQC Report
Sun 21 May 2023
EGAF00007930156

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930156
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455884
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10790.23668301585491047No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10480.22988304042256363No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT9480.20794763580209No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC9330.20465732510901896No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG9240.20268313869317633No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9220.20224443060076683No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT9130.20027024418492423No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8900.1952251011222153No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC7930.1739477586403559No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7810.17131551008589904No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG7580.16627036702319012No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA7110.1559607268515675No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6660.14608979477235437No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6640.1456510866799449No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT5990.13139307367663705No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5540.1215221415974239No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5350.11735441471953391No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5070.1112125014258013No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5060.11099314737959655No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5060.11099314737959655No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG4870.10682542050170657No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT4840.10616735836309237No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4840.10616735836309237No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTT4810.10550929622447816No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCG4770.10463188003965922No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)