FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930157

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930157
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455884
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21340.4681015346009072No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG20110.44112098691772467No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT18930.4152372094655658No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11330.2485281343499662No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10710.23492818348527256No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10700.23470882943906782No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA9490.20816698984829474No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC8980.19697993349185322No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT8550.1875477095050495No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC8390.18403804476577373No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC7570.16605101297698538No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7320.16056716182186698No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG7110.1559607268515675No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG6940.152231708066087No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT6710.14718656500337804No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5850.12832211702977073No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5850.12832211702977073No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC5680.12459309824429021No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5660.12415439015188075No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5580.12239955778224285No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5530.12130278755121916No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5260.1153802283036913No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG5150.1129673337954392No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4920.10792219073273025No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT4870.10682542050170657No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG4860.10660606645550184No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGACC4670.10243833957761185No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)