FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930158

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930158
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482086
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA12320.25555606261123537No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG10020.20784673274063134No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG9580.1987197305045158No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8270.17154615566517178No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGAC7950.16490833585708775No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGG7170.14872865007488292No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6770.14043137531477787No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6470.13420841924469906No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC6430.13337869176868858No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6190.12840032691262554No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6020.12487398513958091No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCT5990.12425168953257304No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC5870.12176250710454152No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGG5780.11989562028351787No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5680.11782130159349162No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC5400.11201320926141808No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT5090.10558282132233669No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)